6e1d368472e3031649cce0d4bee563a6 *DESCRIPTION
e4e26aedb2a62f51f5b589fb2bc3a8c2 *NAMESPACE
bf1b73fba2d8d4e5f115354f02d0c9da *R/DGEList.R
ae7ae672dfccd745e05dcbb390b86af9 *R/S3methods.R
cb3ffa3c6a861f803c8ae7560a76bb8c *R/SE2DGEList.R
190ad7a7f1bf4990a0b07939a0891da6 *R/Seurat2PB.R
210942e57c35663440e407de49ae6922 *R/addPriorCount.R
f2285675df9a2bfa3cf25800522a1320 *R/adjustedProfileLik.R
5047815392b0feb545e3cffce2ab9995 *R/aveLogCPM.R
184d41b50fe065ebd9a9c507dd696ee7 *R/binomTest.R
faf39e01c8486345d19df99b472802b7 *R/calcNormFactors.R
36326d5cd2ab1a1c481561fad52a49b7 *R/calcNormOffsets.R
67fe2d3cd7d58eee480d51ed5ff14b27 *R/cameraPR.R
8b61846eca811906f87452c1b01c34b8 *R/catchKallisto.R
94bba4465733e722a6a0577e21fe42e3 *R/catchRSEM.R
39d00cdcf269dad31f2cbc23a934fc30 *R/catchSalmon.R
464b8aeb08fd2cf5c5af6e114a4203cd *R/classes.R
c420399183baf07c53012228d0f672a5 *R/combine.R
cd18bd84094312c8a71238431a7d1c48 *R/commonCondLogLikDerDelta.R
05813fd7fdfd71967256f6a35b3c3c46 *R/condLogLikDerDelta.R
2c00df65014978cf84dba409015bc362 *R/condLogLikDerSize.R
b058a3eceb09f69e750fc697c19e8df2 *R/cpm.R
ed284b922ee41e3b9c928d07cd95346d *R/cpmByGroup.R
39aa1eca375df1825e19ee7639a11b21 *R/cutWithMinN.R
e442c1a6c9a9ce13606b69c7792132da *R/decidetestsDGE.R
8ba067da64a07f40136d11b4f34a13d5 *R/dglmStdResid.R
e0ccd6520f789768e5444a5005087bfe *R/diffSpliceDGE.R
751c4f6e5c1c99d75f705b3240baf48f *R/dispBinTrend.R
f1264121ff80e593ad72192ef808cdeb *R/dispCoxReid.R
98c7bff49d0eef089b019f27a6d14305 *R/dispCoxReidInterpolateTagwise.R
291f06c0ba253eaf41fbf23f07d1ad89 *R/dispCoxReidPowerTrend.R
3ab4fad59d430db56a7de8e361a5a470 *R/dispCoxReidSplineTrend.R
d54847819fa31ebd3a3d09605e5cc9a2 *R/dispDeviance.R
fd673ad95295fe77cbd077c25f7e53b7 *R/dispPearson.R
164723dc0be94350b93f0f0ab708cb93 *R/dropEmptyLevels.R
b6294302963b40206b464ea0229f66c3 *R/edgeRUsersGuide.R
884677b27c2bb9bdfbd4de5b26c3ee04 *R/effectiveLibSizes.R
5f80a1d3da01309e19eaacda9308322c *R/equalizeLibSizes.R
a891295961d9a8230516320bd4928848 *R/estimateCommonDisp.R
c77290e189ae90498aa285d667737cec *R/estimateDisp.R
2655448feb7c931f5433f195927369e5 *R/estimateGLMCommonDisp.R
feab3eaa724a48b5e76777ae453eea07 *R/estimateGLMRobustDisp.R
18101907364983fae1acaea6caba4c0c *R/estimateGLMTagwiseDisp.R
0ecdc61f01e075716e3418b2197b8829 *R/estimateGLMTrendedDisp.R
a2208f6f2207d0980a3f315ed30d3261 *R/estimateTagwiseDisp.R
fd1a1c60881866f8b75cc8ab82ea498f *R/estimateTrendedDisp.R
df2983a79fcd06199f549f1108e3f508 *R/exactTest.R
5eb43bfd331d2f45513705b55a7cc4b4 *R/exactTestBetaApprox.R
a357c6f22b070269c7efa4792715e2d3 *R/exactTestByDeviance.R
f54fa16815df4fe60f368bee331e7674 *R/exactTestBySmallP.R
9f58c88563c201f8e7199b3dc6eba0ee *R/exactTestDoubleTail.R
add9fe24b9e96398ec667cc912758a4f *R/expandAsMatrix.R
7beac3a7812b7b9ab0ffdd1ba4fcece5 *R/featureCounts2DGEList.R
ba2b9a085552991665ec9e674a82a027 *R/filterByExpr.R
21d0bac7e2832c544025a1e77443e2d6 *R/geneset-DGEGLM.R
9ce1ee4c17b3dd44903bd61169eba8f3 *R/geneset-DGEList.R
2da841fdf69d801070d0f7944f72546a *R/getCounts.R
44d00dbfc0e32fcc26ded33590074952 *R/getDispersion.R
03dbd5a4ecde70c13d3afc2b90f9c964 *R/getOffset.R
3871558b244a5154e2630c85023a545d *R/getPriorN.R
8600e273e5aefe73f46b8e7a5108d85f *R/gini.R
2a65e24ee10bef3379340fdbffa8ebb9 *R/glmQLFTest.R
b15eea76fed8086071504ecf2c83f422 *R/glmTreat.R
128affa9e5213edfcdd482af9089e144 *R/glmfit.R
c6f198bc01daed55ab683f76e841156b *R/goana.R
4c5f270dcc31be0e01a8e9af378e8204 *R/gof.R
029f533fa50fe6f0204ad424cdbcac3f *R/goodTuring.R
553644e9732b70e162a0977a0e167ed5 *R/kegga.R
59272f65079d699e0ceec5d8d54874d9 *R/locfitByCol.R
628b862cf2709a57d0f75b4adaf7877b *R/loessByCol.R
054afe8bd50e6dff92f2f0fddd1ac3c4 *R/maPlot.R
9921bf7d2cf25ad74952c9f5c37fec8a *R/makeCompressedMatrix.R
651b57c1e0ecc4c03f045de5999bfa33 *R/maximizeInterpolant.R
0b55c1b024c82a90231091e1f453d4f0 *R/maximizeQuadratic.R
05a048bee71ccbad522c86d28c0edce1 *R/meanvar.R
cc6c6c970ab2ed9e2d86679556364115 *R/mglmLevenberg.R
3c03eacfdea432129c260e3f5fa873ff *R/mglmOneGroup.R
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67dee70df01059e736e58ff396428ca5 *R/modelMatrixMeth.R
43b9fb6b6793aeefc3be6b7c5e5d6390 *R/movingAverageByCol.R
87249a1546fdf7935032b9f416a2d781 *R/nbinomDeviance.R
b5743565ec0e20a4acd51fb8e1c00b43 *R/nearestReftoX.R
99e8e23964ab19bcfcf1fdea82828d37 *R/nearestTSS.R
314580bbd32e17e133163ac71768ddb7 *R/normLibSizes.R
551f6196d9efd1d669c6660483dfb8ab *R/normalizeBetweenArraysDGEList.R
7cef823ca66e99fefa2c7b757f24e805 *R/normalizeChIPtoInput.R
683e6b312aee963c81896b2d0f75dc71 *R/plotBCV.R
82bafe8ab0cc578ffc1011c3dd33a57c *R/plotMD.R
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88be8403e66f83a392351caffd551828 *R/plotSmear.R
b878fc92e4abf4b9bdc6f433e47e0f1d *R/predFC.R
3f154ddfb18db2633d72f5399b5eaa61 *R/processAmplicons.R
13c16a66a2371fcde39a5a553ee39a1a *R/q2qnbinom.R
8936ca9a37097dd3d7066e03904ac0a6 *R/read10X.R
c6b34eb77c38da26cd8cd63e37c474c1 *R/readBismark2DGE.R
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0d9732a515b1fde125c615b3a1b71dbd *R/residDF.R
d1a839948836ba19034ca6d8a63d6e70 *R/rowsum.R
3f31292bed497c69dbf6c0aac27d2f83 *R/rpkm.R
6ed1eb0391405be75bf242c69e0230b6 *R/rpkmByGroup.R
d211279cb1743bf434d3b12896772457 *R/scaleOffset.R
f2c7c69134b08a1797e4c621c20701cb *R/spliceVariants.R
faee6e64682cbb096a0b82c64b4bc98f *R/splitIntoGroups.R
1c5b92df365f104821411ecb0128ae16 *R/splitIntoGroupsPseudo.R
7c03d80ddfe546fc7d1fc3de493cc0ff *R/subsetting.R
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5217d967dab6f80ad451e50b3d35018b *R/systematicSubset.R
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6efb2df0fa44c0bb252fcdf6a0c6ed6e *R/topTags.R
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464cb1310bab5a49782279ddd0e3a9e6 *R/voomLmFit.R
2a4e6e8fb43afb78b486d32c4dce3754 *R/weightedCondLogLikDerDelta.R
6e133828d626ef4c9732d8fc6f6dee7d *R/zscoreNBinom.R
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60a4d2f46ba9f391e46ef96bbf834ecd *man/WLEB.Rd
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51698c02b413dfd91a942f3f973c433e *man/adjustedProfileLik.Rd
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8f9b889f5bd4893a000531baa3d506bc *man/calcNormFactors.Rd
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52099bf9614bba4637ca8c0b6bd6d082 *man/cbind.Rd
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7f7a5aec5dff80bca82f832f33bac534 *man/estimateTrendedDisp.Rd
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9a2973701b4649c6551850943c0cf6b6 *man/featureCounts2DGEList.Rd
764d2cb256d295644a71220f48d0e26b *man/filterByExpr.Rd
df39bad4bae3077b0c50964910940ecc *man/getCounts.Rd
bfb4368e52d2411c37600f673739d9b8 *man/getPriorN.Rd
af4259d1b819811ee7a2475c0c395de2 *man/gini.Rd
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cb8163edd4321693ac61cfdb86ffba60 *man/gof.Rd
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4a2a68ee1ed543ca98b82d222ca98ffa *man/maPlot.Rd
39169560bca9a5ab57a7dfacb360d657 *man/makeCompressedMatrix.Rd
2f5e0cf818a0faad82fc147037934ec5 *man/maximizeInterpolant.Rd
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93c0489db7ec00a15a37750465627c43 *man/meanvar.Rd
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08d9d812880a097589479df482c0b8d4 *man/movingAverageByCol.Rd
b409783d1d815e2dd8c3c269d6b04d30 *man/nbinomDeviance.Rd
15fd0d6b95d5d31229f59afe99699d66 *man/nbinomUnitDeviance.Rd
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9a3cc78b4ffa75b6bbf24531112fc651 *man/normalizeChIPtoInput.Rd
8a094eb84c001d59cf23661711e91b15 *man/plotBCV.Rd
14db74ee4180bdcf2c6fb86909806db2 *man/plotExonUsage.Rd
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0d4ef935b924158ad91c7c269e345f39 *man/plotSpliceDGE.Rd
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30b3e90211ccf3470cabbbb3ba86c493 *man/processAmplicons.Rd
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7e3a2e8435371092b1268a0cb685b7aa *man/read10X.Rd
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9f9f705821862ec44284fa5dff450c03 *man/sumTechReps.Rd
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7ed2d8eb2412d5fc24cdc1482959816d *man/topTags.Rd
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ccc18c6decbb99e112b331c41157b976 *man/voomLmFit.Rd
cdf32c2daacb4c00b4f6b96c64a06293 *man/weightedCondLogLikDerDelta.Rd
2caba12108e5eecb231597437fbe7931 *man/zscoreNBinom.Rd
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1b8a9c0093dd5b05556c43f745dc92a3 *src/object.c
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870528d566e884d166cab86361f8aa21 *tests/edgeR-Tests.R
0f3a0295316d6e540ddab2be3e85768c *tests/edgeR-Tests.Rout.save
53325d3cee8a8b11dc3cd08a8184f9d3 *vignettes/edgeRUsersGuide.Rnw
e50a42807a80f43d222d139ca76c69ca *vignettes/intro.Rmd
c29fe5c5453cd710a41119b2d4affe40 *vignettes/pdf/edgeRUsersGuide.pdf
